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cfap43 cilia and flagella associated protein 43 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110529079, updated on 15-Mar-2024

Summary

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Gene symbol
cfap43
Gene description
cilia and flagella associated protein 43
See related
Ensembl:ENSOMYG00000065286
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See cfap43 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
39
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 1 NC_048565.1 (73600183..73637760)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 1 NC_035077.1 (69601680..69617447)

Chromosome 1 - NC_048565.1Genomic Context describing neighboring genes Neighboring gene interferon-induced protein with tetratricopeptide repeats 1-like Neighboring gene inositol 1,4,5-trisphosphate receptor interacting protein Neighboring gene interferon-induced protein with tetratricopeptide repeats 1-like Neighboring gene SWI5-dependent homologous recombination repair protein 1 Neighboring gene collagen, type XVII, alpha 1b Neighboring gene STE20-like kinase a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sperm axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cilia- and flagella-associated protein 43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048565.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    73600183..73637760
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036985040.1 → XP_036840935.1  cilia- and flagella-associated protein 43 isoform X3

    UniProtKB/TrEMBL
    A0A060W6H9
    Conserved Domains (5) summary
    COG2319
    Location:133 → 560
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:363 → 399
    7WD40; WD40 repeat [structural motif]
    pfam02463
    Location:824 → 1361
    SMC_N; RecF/RecN/SMC N terminal domain
    pfam03999
    Location:873 → 1005
    MAP65_ASE1; Microtubule associated protein (MAP65/ASE1 family)
    cl29593
    Location:686 → 770
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_036985030.1 → XP_036840925.1  cilia- and flagella-associated protein 43 isoform X1

    UniProtKB/TrEMBL
    A0A060W6H9
    Conserved Domains (5) summary
    COG2319
    Location:133 → 560
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:363 → 399
    7WD40; WD40 repeat [structural motif]
    pfam17380
    Location:1380 → 1722
    DUF5401; Family of unknown function (DUF5401)
    pfam03999
    Location:873 → 1005
    MAP65_ASE1; Microtubule associated protein (MAP65/ASE1 family)
    cl29593
    Location:686 → 770
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_036985034.1 → XP_036840929.1  cilia- and flagella-associated protein 43 isoform X2

    UniProtKB/TrEMBL
    A0A060W6H9, A0A8K9UYG1
    Related
    ENSOMYP00000118384.1, ENSOMYT00000163867.1
    Conserved Domains (5) summary
    COG2319
    Location:84 → 511
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:314 → 350
    7WD40; WD40 repeat [structural motif]
    pfam17380
    Location:1331 → 1673
    DUF5401; Family of unknown function (DUF5401)
    pfam03999
    Location:824 → 956
    MAP65_ASE1; Microtubule associated protein (MAP65/ASE1 family)
    cl29593
    Location:637 → 721
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_036985041.1 → XP_036840936.1  cilia- and flagella-associated protein 43 isoform X4

    UniProtKB/TrEMBL
    A0A060W6H9
    Conserved Domains (3) summary
    COG2319
    Location:104 → 482
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:108 → 144
    7WD40; WD40 repeat [structural motif]
    pfam03999
    Location:618 → 750
    MAP65_ASE1; Microtubule associated protein (MAP65/ASE1 family)
Nucleotide Protein
Heading Accession and Version

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