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LOC110528890 glycogenin-1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110528890, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110528890
Gene description
glycogenin-1
See related
Ensembl:ENSOMYG00000003482
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110528890 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 7 NC_048571.1 (15428476..15438667)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 7 NC_035083.1 (9375765..9386238)

Chromosome 7 - NC_048571.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene uncharacterized LOC118965257 Neighboring gene serine/threonine-protein kinase PAK 2 Neighboring gene plastin-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogenin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048571.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    15428476..15438667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036982715.1 → XP_036838610.1  glycogenin-1

    UniProtKB/TrEMBL
    A0A8C7LYJ8, A0A8C7NEY5
    Related
    ENSOMYP00000007053.2, ENSOMYT00000007852.2
    Conserved Domains (1) summary
    cd02537
    Location:4 → 255
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases