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LOC110527416 beta-1,3-galactosyltransferase 1-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110527416, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110527416
Gene description
beta-1,3-galactosyltransferase 1-like
See related
Ensembl:ENSOMYG00000044161
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110527416 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 7 NC_048571.1 (17536318..17662496, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 7 NC_035083.1 (11498655..11618595, complement)

Chromosome 7 - NC_048571.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 11b Neighboring gene cathepsin K Neighboring gene xin actin-binding repeat-containing protein 2 Neighboring gene cysteine/serine-rich nuclear protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Combining next-generation sequencing with microarray for transcriptome analysis in rainbow trout gonads. Hayashi M, et al. Mol Reprod Dev, 2012 Dec. PMID 23109217
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048571.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    17536318..17662496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021608675.2 → XP_021464350.2  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A8C7UE21
    Related
    ENSOMYP00000097018.2, ENSOMYT00000105402.2
    Conserved Domains (1) summary
    cl21608
    Location:94 → 282
    Galactosyl_T; Galactosyltransferase

  2. XM_021608676.2 → XP_021464351.2  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A8C7UE21
    Conserved Domains (1) summary
    cl21608
    Location:94 → 282
    Galactosyl_T; Galactosyltransferase

  3. XM_021608677.2 → XP_021464352.2  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A8C7UE21
    Conserved Domains (1) summary
    cl21608
    Location:94 → 282
    Galactosyl_T; Galactosyltransferase

RNA

  1. XR_005052540.1 RNA Sequence

  2. XR_005052541.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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