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homer1b homer scaffold protein 1b [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110526146, updated on 12-Sep-2024

Summary

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Gene symbol
homer1b
Gene description
homer scaffold protein 1b
See related
Ensembl:ENSOMYG00000001923
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See homer1b in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 6 NC_048570.1 (51883283..52006875)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 6 NC_035082.1 (47468828..47589017)

Chromosome 6 - NC_048570.1Genomic Context describing neighboring genes Neighboring gene cardiomyopathy associated 5 Neighboring gene terminal nucleotidyltransferase 2 Neighboring gene uncharacterized LOC110493840 Neighboring gene uncharacterized LOC118965080

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled glutamate receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled glutamate receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of store-operated calcium entry IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homer protein homolog 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048570.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    51883283..52006875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021606787.2 → XP_021462462.2  homer protein homolog 1b isoform X2

    UniProtKB/TrEMBL
    A0A8C7LT19, A0A8C7NE50
    Related
    ENSOMYP00000003709.2, ENSOMYT00000004162.2
    Conserved Domains (2) summary
    COG1196
    Location:187 → 355
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd01206
    Location:3 → 111
    EVH1_Homer_Vesl; Homer/Vesl family proteins EVH1 domain

  2. XM_021606786.2 → XP_021462461.2  homer protein homolog 1b isoform X1

    UniProtKB/TrEMBL
    A0A060VZ78, A0A8C7M1H4
    Related
    ENSOMYP00000003712.2, ENSOMYT00000004168.2
    Conserved Domains (2) summary
    COG1196
    Location:236 → 404
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd01206
    Location:52 → 160
    EVH1_Homer_Vesl; Homer/Vesl family proteins EVH1 domain
Nucleotide Protein
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