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LOC110524846 midasin [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110524846, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110524846
Gene description
midasin
See related
Ensembl:ENSOMYG00000012741
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110524846 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 5 NC_048569.1 (93722660..93780941)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 5 NC_035081.1 (87062931..87073385)

Chromosome 5 - NC_048569.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YGR130C Neighboring gene torsin-1A-interacting protein 2 Neighboring gene olfactomedin-like 2Ba Neighboring gene activating transcription factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
activating transcription factor 7-interacting protein 1; midasin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048569.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    93722660..93780941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036978872.1 → XP_036834767.1  activating transcription factor 7-interacting protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7PTC9, A0A8K9Y2F8
    Related
    ENSOMYP00000026997.2, ENSOMYT00000029516.2
    Conserved Domains (2) summary
    COG5271
    Location:39 → 568
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam05609
    Location:1034 → 1240
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_036978873.1 → XP_036834768.1  activating transcription factor 7-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8K9Y2F8
    Conserved Domains (2) summary
    COG5271
    Location:39 → 568
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam05609
    Location:1022 → 1228
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_036978877.1 → XP_036834772.1  activating transcription factor 7-interacting protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8K9Y2F8
    Related
    ENSOMYP00000118142.1, ENSOMYT00000142450.1
    Conserved Domains (3) summary
    COG5271
    Location:39 → 568
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK08581
    Location:517 → 761
    PRK08581; amidase domain-containing protein
    pfam05609
    Location:949 → 1155
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  4. XM_036978874.1 → XP_036834769.1  activating transcription factor 7-interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8K9Y2F8
    Conserved Domains (3) summary
    COG5271
    Location:39 → 568
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK08581
    Location:602 → 846
    PRK08581; amidase domain-containing protein
    pfam05609
    Location:949 → 1155
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  5. XM_036978875.1 → XP_036834770.1  midasin isoform X4

    UniProtKB/TrEMBL
    A0A8K9Y2F8
    Conserved Domains (3) summary
    COG5271
    Location:39 → 568
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK08581
    Location:517 → 761
    PRK08581; amidase domain-containing protein
    pfam05609
    Location:949 → 1155
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  6. XM_036978878.1 → XP_036834773.1  midasin isoform X7

    UniProtKB/TrEMBL
    A0A8K9UIF6
    Conserved Domains (3) summary
    COG5271
    Location:39 → 568
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK08581
    Location:517 → 761
    PRK08581; amidase domain-containing protein
    pfam05609
    Location:864 → 1070
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  7. XM_036978876.1 → XP_036834771.1  activating transcription factor 7-interacting protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8K9Y2F8
    Conserved Domains (3) summary
    COG5271
    Location:39 → 568
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK08581
    Location:517 → 761
    PRK08581; amidase domain-containing protein
    pfam05609
    Location:949 → 1155
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  8. XM_036978879.1 → XP_036834774.1  activating transcription factor 7-interacting protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A8K9UIF6
    Conserved Domains (3) summary
    COG5271
    Location:39 → 568
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK08581
    Location:517 → 761
    PRK08581; amidase domain-containing protein
    pfam05609
    Location:864 → 1070
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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