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LOC110524629 glucoside xylosyltransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110524629, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110524629
Gene description
glucoside xylosyltransferase 1
See related
Ensembl:ENSOMYG00000028164
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110524629 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 1 NC_048565.1 (51900323..51917984)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 1 NC_035077.1 (48383127..48400878)

Chromosome 1 - NC_048565.1Genomic Context describing neighboring genes Neighboring gene prickle-like protein 1 Neighboring gene periphilin-1 Neighboring gene YY1-associated factor 2 Neighboring gene PDZ domain-containing RING finger protein 4 Neighboring gene E3 ubiquitin-protein ligase PDZRN3-B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucoside xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048565.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    51900323..51917984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021604484.2 → XP_021460159.2  glucoside xylosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7S6W8, A0A8C7S7Z2
    Related
    ENSOMYP00000060919.2, ENSOMYT00000066321.2
    Conserved Domains (1) summary
    cd06430
    Location:100 → 403
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function

  2. XM_021604473.2 → XP_021460148.2  glucoside xylosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7S7Z2
    Conserved Domains (1) summary
    cd06430
    Location:127 → 430
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function

RNA

  1. XR_002473620.2 RNA Sequence

    Related
    ENSOMYT00000066342.2

  2. XR_005052038.1 RNA Sequence

    Related
    ENSOMYT00000066306.2
Nucleotide Protein
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