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LOC110523911 chondroitin sulfate N-acetylgalactosaminyltransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110523911, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110523911
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1
See related
Ensembl:ENSOMYG00000031026
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110523911 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 5 NC_048569.1 (44405237..44440603)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 5 NC_035081.1 (41041975..41078761)

Chromosome 5 - NC_048569.1Genomic Context describing neighboring genes Neighboring gene hippocampus abundant transcript 1 protein Neighboring gene spindlin-W Neighboring gene nucleoredoxin like 2 Neighboring gene uncharacterized LOC110523915 Neighboring gene phospholipid phosphatase 1 Neighboring gene exosome RNA helicase MTR4 Neighboring gene small nucleolar RNA SNORA35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048569.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    44405237..44440603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036977632.1 → XP_036833527.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X2

    Conserved Domains (1) summary
    cl11394
    Location:165 → 339
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_021603056.2 → XP_021458731.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7SHN1, A0A8K9UF41
    Conserved Domains (1) summary
    cl11394
    Location:168 → 538
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_021603054.2 → XP_021458729.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7SHN1, A0A8K9UF41
    Related
    ENSOMYP00000066953.1, ENSOMYT00000072912.2
    Conserved Domains (1) summary
    cl11394
    Location:168 → 538
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_021603053.2 → XP_021458728.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7SHN1, A0A8K9UF41
    Conserved Domains (1) summary
    cl11394
    Location:168 → 538
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_021603055.2 → XP_021458730.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7SHN1, A0A8K9UF41
    Conserved Domains (1) summary
    cl11394
    Location:168 → 538
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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