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LOC110523531 crk-like protein [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110523531, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110523531
Gene description
crk-like protein
See related
Ensembl:ENSOMYG00000028728
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110523531 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 5 NC_048569.1 (28052621..28067973)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 5 NC_035081.1 (24843272..24858345)

Chromosome 5 - NC_048569.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 15 Neighboring gene putative nuclease HARBI1 Neighboring gene T-box-containing protein TBX6L Neighboring gene phosphoglycerate mutase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
crk-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048569.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    28052621..28067973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021602309.2 → XP_021457984.1  crk-like protein isoform X1

    UniProtKB/TrEMBL
    A0A060WAS8, A0A8C7S626
    Conserved Domains (3) summary
    cd09926
    Location:6 → 106
    SH2_CRK_like; Src homology 2 domain found in cancer-related signaling adaptor protein CRK
    cd11758
    Location:126 → 180
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cl17036
    Location:238 → 294
    SH3; Src Homology 3 domain superfamily

  2. XM_021602311.2 → XP_021457986.1  crk-like protein isoform X3

    Conserved Domains (3) summary
    cd11758
    Location:92 → 146
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cl15255
    Location:1 → 72
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:204 → 260
    SH3; Src Homology 3 domain superfamily

  3. XM_036977177.1 → XP_036833072.1  crk-like protein isoform X1

    UniProtKB/TrEMBL
    A0A060WAS8, A0A8C7S626
    Conserved Domains (3) summary
    cd09926
    Location:6 → 106
    SH2_CRK_like; Src homology 2 domain found in cancer-related signaling adaptor protein CRK
    cd11758
    Location:126 → 180
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cl17036
    Location:238 → 294
    SH3; Src Homology 3 domain superfamily

  4. XM_021602308.2 → XP_021457983.1  crk-like protein isoform X1

    UniProtKB/TrEMBL
    A0A060WAS8, A0A8C7S626
    Conserved Domains (3) summary
    cd09926
    Location:6 → 106
    SH2_CRK_like; Src homology 2 domain found in cancer-related signaling adaptor protein CRK
    cd11758
    Location:126 → 180
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cl17036
    Location:238 → 294
    SH3; Src Homology 3 domain superfamily

  5. XM_036977178.1 → XP_036833073.1  crk-like protein isoform X2

    UniProtKB/TrEMBL
    A0A060WAS8
    Conserved Domains (3) summary
    cd09926
    Location:2 → 102
    SH2_CRK_like; Src homology 2 domain found in cancer-related signaling adaptor protein CRK
    cd11758
    Location:122 → 176
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cl17036
    Location:234 → 290
    SH3; Src Homology 3 domain superfamily

  6. XM_021602307.2 → XP_021457982.1  crk-like protein isoform X1

    UniProtKB/TrEMBL
    A0A060WAS8, A0A8C7S626
    Related
    ENSOMYP00000062094.1, ENSOMYT00000067630.2
    Conserved Domains (3) summary
    cd09926
    Location:6 → 106
    SH2_CRK_like; Src homology 2 domain found in cancer-related signaling adaptor protein CRK
    cd11758
    Location:126 → 180
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cl17036
    Location:238 → 294
    SH3; Src Homology 3 domain superfamily

  7. XM_021602310.2 → XP_021457985.1  crk-like protein isoform X3

    Conserved Domains (3) summary
    cd11758
    Location:92 → 146
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cl15255
    Location:1 → 72
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:204 → 260
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
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