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LOC110521823 protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110521823, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110521823
Gene description
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
See related
Ensembl:ENSOMYG00000005992
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
pomgnt1
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Genomic context

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See LOC110521823 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
21
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 30 NC_050570.1 (39931006..39957917)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 4 NC_035080.1 (36614501..36645274)

Chromosome 30 - NC_050570.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor 38A Neighboring gene interferon-induced protein with tetratricopeptide repeats 2-like Neighboring gene uncharacterized LOC118945792 Neighboring gene phosphoinositide-3-kinase, regulatory subunit 3b (gamma)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Names
protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_050570.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    39931006..39957917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021599715.2 → XP_021455390.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A8C7NTQ8, A0A8K9WVH7
    Related
    ENSOMYP00000012243.1, ENSOMYT00000013549.2
    Conserved Domains (2) summary
    cd02514
    Location:296 → 623
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:94 → 241
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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