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LOC110520778 alpha-1,3/1,6-mannosyltransferase ALG2-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110520778, updated on 18-Sep-2024

Summary

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Gene symbol
LOC110520778
Gene description
alpha-1,3/1,6-mannosyltransferase ALG2-like
See related
Ensembl:ENSOMYG00000030955
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110520778 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 3 NC_048567.1 (5951557..5957032, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 3 NC_035079.1 (10393917..10537777)

Chromosome 3 - NC_048567.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 245 Neighboring gene uncharacterized LOC110508233 Neighboring gene DOMON domain-containing protein FRRS1L Neighboring gene protein transport protein Sec61 subunit beta Neighboring gene nuclear receptor subfamily 4 group A member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alpha-1,3-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3/1,6-mannosyltransferase ALG2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048567.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    5951557..5957032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036966889.1 → XP_036822784.1  alpha-1,3/1,6-mannosyltransferase ALG2-like

    UniProtKB/TrEMBL
    A0A8C7SKI5
    Related
    ENSOMYP00000066812.1, ENSOMYT00000072756.2
    Conserved Domains (1) summary
    cd03805
    Location:2 → 398
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins

RNA

  1. XR_005040269.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases