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LOC110520121 acetylcholine receptor subunit alpha [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110520121, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110520121
Gene description
acetylcholine receptor subunit alpha
See related
Ensembl:ENSOMYG00000022578
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110520121 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 3 NC_048567.1 (49895327..49901575, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 3 NC_035079.1 (53033232..53039258, complement)

Chromosome 3 - NC_048567.1Genomic Context describing neighboring genes Neighboring gene secernin-3-like Neighboring gene G protein-coupled receptor 155a Neighboring gene N-chimaerin Neighboring gene activating transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048567.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    49895327..49901575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021597196.2 → XP_021452871.1  acetylcholine receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A060YKB0, A0A8C7REG6
    Related
    ENSOMYP00000051159.2, ENSOMYT00000055622.2
    Conserved Domains (2) summary
    pfam02931
    Location:24 → 231
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:238 → 446
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  2. XM_036974448.1 → XP_036830343.1  acetylcholine receptor subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C7RIH8
    Related
    ENSOMYP00000051181.2, ENSOMYT00000055644.2
    Conserved Domains (2) summary
    TIGR00860
    Location:22 → 445
    LIC; Cation transporter family protein
    cd19014
    Location:20 → 229
    LGIC_ECD_nAChR_A1; extracellular domain of nicotinic acetylcholine receptor subunit alpha 1 (CHRNA1)
Nucleotide Protein
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