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LOC110520045 polypeptide N-acetylgalactosaminyltransferase 13 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110520045, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110520045
Gene description
polypeptide N-acetylgalactosaminyltransferase 13
See related
Ensembl:ENSOMYG00000043487
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110520045 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 3 NC_048567.1 (46724055..46777392)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 3 NC_035079.1 (49862513..49922106)

Chromosome 3 - NC_048567.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-processing factor 40 homolog A Neighboring gene reprimo, TP53 dependent G2 arrest mediator candidate a Neighboring gene G protein-activated inward rectifier potassium channel 1-like Neighboring gene nuclear receptor subfamily 4 group A member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048567.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    46724055..46777392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036974308.1 → XP_036830203.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X2

    UniProtKB/TrEMBL
    A0A8C7UFW7, A0A8C7ULL3
    Related
    ENSOMYP00000096128.2, ENSOMYT00000104443.2
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 547
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_036974307.1 → XP_036830202.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A8C7U930, A0A8C7UIK2
    Related
    ENSOMYP00000096082.1, ENSOMYT00000104395.2
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 548
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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