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LOC110519954 heparan sulfate 6-O-sulfotransferase 2 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110519954, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110519954
Gene description
heparan sulfate 6-O-sulfotransferase 2
See related
Ensembl:ENSOMYG00000007568
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
hs6st2
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Genomic context

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See LOC110519954 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 3 NC_048567.1 (39388775..39393540, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 3 NC_035079.1 (42536268..42540969, complement)

Chromosome 3 - NC_048567.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118954848 Neighboring gene muscleblind-like protein 3 Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene glypican-4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048567.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    39388775..39393540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021596863.2 → XP_021452538.1  heparan-sulfate 6-O-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A060WW52, A0A8C7NZW5
    Related
    ENSOMYP00000015345.1, ENSOMYT00000016948.2
    Conserved Domains (1) summary
    pfam03567
    Location:100 → 367
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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