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LOC110516863 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110516863, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110516863
Gene description
2-hydroxyacylsphingosine 1-beta-galactosyltransferase
See related
Ensembl:ENSOMYG00000063539
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110516863 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) Unplaced Scaffold NW_023493770.1 (72897..166294, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) Unplaced Scaffold NW_018587280.1 (32416..35114)

NW_023493770.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-hydroxyacylsphingosine 1-beta-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NW_023493770.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    72897..166294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036973807.1 → XP_036829702.1  2-hydroxyacylsphingosine 1-beta-galactosyltransferase

    UniProtKB/TrEMBL
    A0A8K9XCQ2
    Related
    ENSOMYP00000131545.1, ENSOMYT00000162273.1
    Conserved Domains (1) summary
    cl10013
    Location:25 → 497
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
Nucleotide Protein
Heading Accession and Version

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