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LOC110510171 putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110510171, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110510171
Gene description
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13
See related
Ensembl:ENSOMYG00000044537
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110510171 in Genome Data Viewer
Location:
chromosome: Y
Exon count:
24
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) Y NC_048593.1 (34965129..34979665, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 29 NC_035105.1 (33746169..33760681, complement)

Chromosome Y - NC_048593.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110510169 Neighboring gene uncharacterized LOC118945311 Neighboring gene short transient receptor potential channel 5 Neighboring gene dachshund homolog 2-like Neighboring gene proline-rich extensin-like protein EPR1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048593.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    34965129..34979665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021591532.2 → XP_021447207.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1

    UniProtKB/TrEMBL
    A0A060X8A1, A0A8C7UN88
    Related
    ENSOMYP00000098039.2, ENSOMYT00000106460.2
    Conserved Domains (3) summary
    cd04508
    Location:310 → 358
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:53 → 132
    OTU; OTU-like cysteine protease
    cl28087
    Location:689 → 884
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  2. XM_021591539.2 → XP_021447214.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X9

    UniProtKB/TrEMBL
    A0A060X8A1
    Conserved Domains (3) summary
    cd04508
    Location:310 → 358
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:53 → 132
    OTU; OTU-like cysteine protease
    cl28087
    Location:658 → 853
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  3. XM_036968180.1 → XP_036824075.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X7

    UniProtKB/TrEMBL
    A0A060X8A1
    Conserved Domains (3) summary
    PHA03247
    Location:358 → 876
    PHA03247; large tegument protein UL36; Provisional
    cl02573
    Location:302 → 378
    Tudor_SF; Tudor domain superfamily
    cl19932
    Location:53 → 132
    OTU; OTU-like cysteine protease

  4. XM_021591536.2 → XP_021447211.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X4

    UniProtKB/TrEMBL
    A0A060X8A1
    Conserved Domains (3) summary
    cd04508
    Location:310 → 358
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:53 → 132
    OTU; OTU-like cysteine protease
    cl28087
    Location:685 → 880
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  5. XM_021591534.2 → XP_021447209.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X2

    UniProtKB/TrEMBL
    A0A060X8A1
    Conserved Domains (3) summary
    cd04508
    Location:310 → 358
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:53 → 132
    OTU; OTU-like cysteine protease
    cl28087
    Location:688 → 883
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  6. XM_021591538.2 → XP_021447213.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X8

    UniProtKB/TrEMBL
    A0A060X8A1
    Conserved Domains (3) summary
    cd04508
    Location:310 → 358
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:53 → 132
    OTU; OTU-like cysteine protease
    cl26464
    Location:358 → 874
    Atrophin-1; Atrophin-1 family

  7. XM_036968179.1 → XP_036824074.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X5

    UniProtKB/TrEMBL
    A0A060X8A1
    Conserved Domains (3) summary
    PHA03247
    Location:358 → 877
    PHA03247; large tegument protein UL36; Provisional
    cl02573
    Location:302 → 378
    Tudor_SF; Tudor domain superfamily
    cl19932
    Location:53 → 132
    OTU; OTU-like cysteine protease

  8. XM_021591537.2 → XP_021447212.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X6

    UniProtKB/TrEMBL
    A0A060X8A1
    Conserved Domains (3) summary
    cd04508
    Location:310 → 358
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:53 → 132
    OTU; OTU-like cysteine protease
    cl26464
    Location:358 → 876
    Atrophin-1; Atrophin-1 family

  9. XM_021591535.2 → XP_021447210.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X3

    UniProtKB/TrEMBL
    A0A060X8A1
    Conserved Domains (3) summary
    cd04508
    Location:310 → 358
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:53 → 132
    OTU; OTU-like cysteine protease
    cl28087
    Location:686 → 881
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
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