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dhx9 DEAH (Asp-Glu-Ala-His) box helicase 9 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110508753, updated on 15-Mar-2024

Summary

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Gene symbol
dhx9
Gene description
DEAH (Asp-Glu-Ala-His) box helicase 9
See related
Ensembl:ENSOMYG00000026903
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See dhx9 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
28
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 28 NC_048592.1 (22914656..22934260)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 28 NC_035104.1 (22685269..22704955)

Chromosome 28 - NC_048592.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 45 Neighboring gene RAS protein activator like 2 Neighboring gene testicular spindle-associated protein SHCBP1L Neighboring gene laminin, gamma 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two DExD/H-box helicases, DDX3 and DHX9, identified in rainbow trout are able to bind dsRNA. Poynter SJ, et al. Fish Shellfish Immunol, 2019 Oct. PMID 31340170
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables 3'-5' DNA/RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase A
Names
DExD/H-box helicase 9
DExH-box helicase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048592.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    22914656..22934260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021589532.2 → XP_021445207.2  ATP-dependent RNA helicase A isoform X1

    UniProtKB/TrEMBL
    A0A3G5BTE0, A0A8C7RTN3
    Related
    ENSOMYP00000058305.2, ENSOMYT00000063469.2
    Conserved Domains (4) summary
    COG1643
    Location:441 → 1116
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd17972
    Location:395 → 628
    DEXHc_DHX9; DEXH-box helicase domain of DEAH-box helicase 9
    cd19854
    Location:48 → 116
    DSRM_DHX9_rpt1; first double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
    cd19855
    Location:243 → 317
    DSRM_DHX9_rpt2; second double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins

  2. XM_036966221.1 → XP_036822116.1  ATP-dependent RNA helicase A isoform X2

    UniProtKB/TrEMBL
    A0A3G5BTE0
    Conserved Domains (4) summary
    COG1643
    Location:423 → 1098
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd17972
    Location:377 → 610
    DEXHc_DHX9; DEXH-box helicase domain of DEAH-box helicase 9
    cd19854
    Location:30 → 98
    DSRM_DHX9_rpt1; first double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
    cd19855
    Location:225 → 299
    DSRM_DHX9_rpt2; second double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
Nucleotide Protein
Heading Accession and Version

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