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LOC110508322 kin of IRRE-like protein 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110508322, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110508322
Gene description
kin of IRRE-like protein 1
See related
Ensembl:ENSOMYG00000042702
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110508322 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
18
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 28 NC_048592.1 (1458212..1562320, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 28 NC_035104.1 (1517075..1619989, complement)

Chromosome 28 - NC_048592.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110508320 Neighboring gene ATP-sensitive inward rectifier potassium channel 10 Neighboring gene cell adhesion molecule 3 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout. Al-Tobasei R, et al. PLoS One, 2016. PMID 26895175, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048592.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    1458212..1562320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021588756.2 → XP_021444431.2  kin of IRRE-like protein 1

    UniProtKB/TrEMBL
    A0A8C7U730
    Related
    ENSOMYP00000093266.2, ENSOMYT00000101432.2
    Conserved Domains (5) summary
    smart00408
    Location:322 → 371
    IGc2; Immunoglobulin C-2 Type
    pfam13927
    Location:220 → 277
    Ig_3; Immunoglobulin domain
    cd00096
    Location:121 → 124
    Ig; Ig strand A [structural motif]
    cd05898
    Location:389 → 492
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:120 → 217
    Ig; Immunoglobulin domain

RNA

  1. XR_005040235.1 RNA Sequence

  2. XR_002471272.2 RNA Sequence

  3. XR_005040234.1 RNA Sequence

  4. XR_005040233.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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