U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110507861 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110507861, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110507861
Gene description
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4
See related
Ensembl:ENSOMYG00000047344
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC110507861 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
16
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 27 NC_048591.1 (25831654..25890906, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 27 NC_035103.1 (25384272..25416546, complement)

Chromosome 27 - NC_048591.1Genomic Context describing neighboring genes Neighboring gene potassium inwardly rectifying channel subfamily J member 1a, tandem duplicate 1 Neighboring gene potassium inwardly rectifying channel subfamily J member 5 Neighboring gene signal recognition particle receptor subunit alpha Neighboring gene toll-interleukin 1 receptor (TIR) domain containing adaptor protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048591.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    25831654..25890906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036964905.1 → XP_036820800.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X6

    Conserved Domains (1) summary
    pfam00777
    Location:91 → 250
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_036964902.1 → XP_036820797.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X3

    UniProtKB/TrEMBL
    A0A8C7UZP9
    Conserved Domains (1) summary
    pfam00777
    Location:91 → 310
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_021588235.2 → XP_021443910.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C7UZP9
    Related
    ENSOMYP00000105712.1, ENSOMYT00000114557.2
    Conserved Domains (1) summary
    pfam00777
    Location:90 → 336
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_036964904.1 → XP_036820799.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X5

    Conserved Domains (1) summary
    pfam00777
    Location:91 → 250
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_036964901.1 → XP_036820796.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C7UZQ9
    Related
    ENSOMYP00000105724.2, ENSOMYT00000114569.2
    Conserved Domains (1) summary
    pfam00777
    Location:91 → 250
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_036964906.1 → XP_036820801.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X7

    Conserved Domains (1) summary
    pfam00777
    Location:91 → 250
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  7. XM_036964903.1 → XP_036820798.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X4

    Conserved Domains (1) summary
    pfam00777
    Location:91 → 250
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases