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LOC110506644 anoctamin-5 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110506644, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110506644
Gene description
anoctamin-5
See related
Ensembl:ENSOMYG00000043612
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110506644 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
23
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 26 NC_048590.1 (32219068..32246388)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 26 NC_035102.1 (22090838..22120708)

Chromosome 26 - NC_048590.1Genomic Context describing neighboring genes Neighboring gene anoctamin-9 Neighboring gene protein TSSC4 Neighboring gene vesicular glutamate transporter 2.1 Neighboring gene growth arrest-specific protein 2 Neighboring gene transmembrane protein 178B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout. Al-Tobasei R, et al. PLoS One, 2016. PMID 26895175, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048590.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    32219068..32246388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036963549.1 → XP_036819444.1  anoctamin-5 isoform X4

    UniProtKB/TrEMBL
    A0A8C7UB61, A0A8C7UGX1
    Conserved Domains (2) summary
    pfam04547
    Location:262 → 848
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:42 → 259
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_021586420.2 → XP_021442095.2  anoctamin-5 isoform X3

    UniProtKB/TrEMBL
    A0A8C7R2S4, A0A8C7UNT6
    Related
    ENSOMYP00000044530.2, ENSOMYT00000048508.2
    Conserved Domains (2) summary
    pfam04547
    Location:265 → 851
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:45 → 262
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  3. XM_021586421.2 → XP_021442096.2  anoctamin-5 isoform X4

    UniProtKB/TrEMBL
    A0A8C7UB61, A0A8C7UGX1
    Related
    ENSOMYP00000095802.2, ENSOMYT00000104100.2
    Conserved Domains (2) summary
    pfam04547
    Location:262 → 848
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:42 → 259
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  4. XM_021586419.2 → XP_021442094.2  anoctamin-5 isoform X2

    UniProtKB/TrEMBL
    A0A8C7UB61, A0A8C7UNJ5
    Related
    ENSOMYP00000095743.2, ENSOMYT00000104041.2
    Conserved Domains (2) summary
    pfam04547
    Location:281 → 867
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:61 → 278
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  5. XM_036963548.1 → XP_036819443.1  anoctamin-5 isoform X1

    UniProtKB/TrEMBL
    A0A8C7UB61
    Conserved Domains (2) summary
    pfam04547
    Location:326 → 912
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:106 → 323
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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