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LOC110506485 polypeptide N-acetylgalactosaminyltransferase 18 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110506485, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110506485
Gene description
polypeptide N-acetylgalactosaminyltransferase 18
See related
Ensembl:ENSOMYG00000025736
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110506485 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
12
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 26 NC_048590.1 (25840671..25927023)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 26 NC_035102.1 (15970660..16054614)

Chromosome 26 - NC_048590.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4 gamma 2 Neighboring gene uncharacterized LOC118944499 Neighboring gene uncharacterized LOC118944449 Neighboring gene BTB/POZ domain-containing protein 10 Neighboring gene parathyroid hormone 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048590.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    25840671..25927023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021586128.2 → XP_021441803.2  polypeptide N-acetylgalactosaminyltransferase 18 isoform X1

    UniProtKB/TrEMBL
    A0A060WHR6
    Related
    ENSOMYP00000056025.2, ENSOMYT00000060983.2
    Conserved Domains (2) summary
    cd02510
    Location:159 → 460
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:473 → 600
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  2. XM_036963855.1 → XP_036819750.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X2

    UniProtKB/TrEMBL
    A0A060WHR6
    Conserved Domains (2) summary
    cd02510
    Location:42 → 343
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:356 → 483
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
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