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capn3a calpain 3a, (p94) [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110505915, updated on 15-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
See related
Ensembl:ENSOMYG00000030652
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: 25
Exon count:
22
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 25 NC_048589.1 (44466629..44540551)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 25 NC_035101.1 (78856305..78867201)

Chromosome 25 - NC_048589.1Genomic Context describing neighboring genes Neighboring gene probable N-acetyltransferase camello Neighboring gene VPS39 subunit of HOPS complex Neighboring gene transmembrane protein 87A Neighboring gene zinc finger protein 106a Neighboring gene proton activated chloride channel 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048589.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    44466629..44540551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036963109.1 → XP_036819004.1  calpain-3 isoform X1

    UniProtKB/TrEMBL
    A0A8K9V2C8
    Conserved Domains (4) summary
    cd15897
    Location:542 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:542 → 714
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 348
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:369 → 507
    Calpain_III; Calpain large subunit, domain III

  2. XM_036963110.1 → XP_036819005.1  calpain-3 isoform X2

    UniProtKB/TrEMBL
    A0A8K9V2C8
    Related
    ENSOMYP00000120136.1, ENSOMYT00000120653.1
    Conserved Domains (4) summary
    cd15897
    Location:542 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:542 → 711
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 348
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:369 → 507
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein
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