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LOC110504523 beta-1,4-galactosyltransferase 7 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110504523, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110504523
Gene description
beta-1,4-galactosyltransferase 7
See related
Ensembl:ENSOMYG00000039226
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110504523 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
6
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 31 NC_050571.1 (9080162..9085964, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 25 NC_035101.1 (5772432..5774734, complement)

Chromosome 31 - NC_050571.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 69 Neighboring gene uncharacterized LOC118946015 Neighboring gene homeobox protein EMX1-like Neighboring gene transmembrane emp24 domain-containing protein 9 Neighboring gene vesicular integral-membrane protein VIP36

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables xylosylprotein 4-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_050571.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    9080162..9085964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036970529.1 → XP_036826424.1  beta-1,4-galactosyltransferase 7 isoform X2

    UniProtKB/TrEMBL
    A0A8C7RR20, A0A8C7TG00
    Related
    ENSOMYP00000078616.2, ENSOMYT00000085635.2
    Conserved Domains (1) summary
    cd00899
    Location:112 → 335
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  2. XM_036970528.1 → XP_036826423.1  beta-1,4-galactosyltransferase 7 isoform X1

    UniProtKB/TrEMBL
    A0A8C7RR20
    Conserved Domains (1) summary
    cd00899
    Location:112 → 336
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein
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