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LOC110504222 heparan-sulfate 6-O-sulfotransferase 3-B-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110504222, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110504222
Gene description
heparan-sulfate 6-O-sulfotransferase 3-B-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110504222 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 3 NC_048567.1 (50960859..51059220, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 3 NC_035079.1 (54103784..54112582, complement)

Chromosome 3 - NC_048567.1Genomic Context describing neighboring genes Neighboring gene muscleblind-like protein 2a Neighboring gene 2-oxoglutarate receptor 1 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 2 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 3a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 3-B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048567.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    50960859..51059220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036974546.1 → XP_036830441.1  heparan-sulfate 6-O-sulfotransferase 3-B-like

    Conserved Domains (1) summary
    pfam03567
    Location:93 → 354
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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