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LOC110504038 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110504038, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110504038
Gene description
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4
See related
Ensembl:ENSOMYG00000039973
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110504038 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
14
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 24 NC_048588.1 (23226797..23295189, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 24 NC_035100.1 (22252567..22322577, complement)

Chromosome 24 - NC_048588.1Genomic Context describing neighboring genes Neighboring gene ATP-sensitive inward rectifier potassium channel 1-like Neighboring gene G protein-activated inward rectifier potassium channel 4 Neighboring gene toll/interleukin-1 receptor domain-containing adapter protein-like Neighboring gene signal recognition particle receptor subunit alpha Neighboring gene protein FAM118B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048588.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    23226797..23295189 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021582838.2 → XP_021438513.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C7TXM8, A0A8C7TXN7
    Conserved Domains (1) summary
    pfam00777
    Location:92 → 337
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_036961429.1 → XP_036817324.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C7TXM8, A0A8C7TXN7
    Related
    ENSOMYP00000086317.1, ENSOMYT00000094060.2
    Conserved Domains (1) summary
    pfam00777
    Location:92 → 337
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_021582840.2 → XP_021438515.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C7TXM8, A0A8C7TXN7
    Related
    ENSOMYP00000086329.2, ENSOMYT00000094072.2
    Conserved Domains (1) summary
    pfam00777
    Location:92 → 337
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_021582839.2 → XP_021438514.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C7TXM8, A0A8C7TXN7
    Conserved Domains (1) summary
    pfam00777
    Location:92 → 337
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_021582841.2 → XP_021438516.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X2

    Conserved Domains (1) summary
    pfam00777
    Location:91 → 251
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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