U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110503892 polypeptide N-acetylgalactosaminyltransferase 17 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110503892, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110503892
Gene description
polypeptide N-acetylgalactosaminyltransferase 17
See related
Ensembl:ENSOMYG00000031332
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC110503892 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
12
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 24 NC_048588.1 (17533121..17549493, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 24 NC_035100.1 (16763545..16775123, complement)

Chromosome 24 - NC_048588.1Genomic Context describing neighboring genes Neighboring gene ribosome maturation protein SBDS Neighboring gene calcium-binding protein 8 Neighboring gene flotillin-2 Neighboring gene protein FAM222B

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
polypeptide N-acetylgalactosaminyltransferase 17
Names
putative polypeptide N-acetylgalactosaminyltransferase-like protein 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048588.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    17533121..17549493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021582511.2 → XP_021438186.2  polypeptide N-acetylgalactosaminyltransferase 17 isoform X1

    UniProtKB/TrEMBL
    A0A060WJH3
    Conserved Domains (2) summary
    cd02510
    Location:155 → 461
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:472 → 597
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_021582513.2 → XP_021438188.2  polypeptide N-acetylgalactosaminyltransferase 17 isoform X2

    UniProtKB/TrEMBL
    A0A060WJH3, A0A8C7SET5
    Related
    ENSOMYP00000067625.2, ENSOMYT00000073656.2
    Conserved Domains (2) summary
    cd02510
    Location:155 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:465 → 590
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases