U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110503772 zinc finger and BTB domain-containing protein 44 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110503772, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110503772
Gene description
zinc finger and BTB domain-containing protein 44
See related
Ensembl:ENSOMYG00000042562
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC110503772 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
7
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 24 NC_048588.1 (12616675..12646136)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 24 NC_035100.1 (12127126..12152613)

Chromosome 24 - NC_048588.1Genomic Context describing neighboring genes Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 15 Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 8 Neighboring gene uncharacterized protein C11orf53 homolog Neighboring gene colorectal cancer associated 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger and BTB domain-containing protein 44

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048588.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    12616675..12646136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036961914.1 → XP_036817809.1  zinc finger and BTB domain-containing protein 44 isoform X3

    Conserved Domains (5) summary
    COG5048
    Location:514 → 578
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:428 → 578
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:530 → 550
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18228
    Location:139 → 257
    BTB_POZ_ZBTB44; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 44 (ZBTB44)
    pfam13465
    Location:542 → 567
    zf-H2C2_2; Zinc-finger double domain

  2. XM_036961913.1 → XP_036817808.1  zinc finger and BTB domain-containing protein 44 isoform X1

    Conserved Domains (6) summary
    COG5048
    Location:514 → 578
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:428 → 578
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:530 → 550
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:618 → 640
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18228
    Location:139 → 257
    BTB_POZ_ZBTB44; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 44 (ZBTB44)
    pfam13465
    Location:542 → 567
    zf-H2C2_2; Zinc-finger double domain

  3. XM_021582287.2 → XP_021437962.2  zinc finger and BTB domain-containing protein 44 isoform X2

    UniProtKB/TrEMBL
    A0A8C7U483, A0A8C7V904
    Related
    ENSOMYP00000092853.2, ENSOMYT00000100987.2
    Conserved Domains (6) summary
    COG5189
    Location:301 → 451
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:403 → 423
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:491 → 513
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:12 → 130
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam00096
    Location:401 → 423
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:415 → 440
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases