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LOC110502904 heparan sulfate glucosamine 3-O-sulfotransferase 6-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110502904, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110502904
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 6-like
See related
Ensembl:ENSOMYG00000021619
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110502904 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
2
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 23 NC_048587.1 (48562471..48594868, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 23 NC_035099.1 (38018630..38060759, complement)

Chromosome 23 - NC_048587.1Genomic Context describing neighboring genes Neighboring gene membrane-associated progesterone receptor component 1 Neighboring gene meiosis specific with OB-fold Neighboring gene RING finger protein 151 Neighboring gene NADPH oxidase organizer 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048587.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    48562471..48594868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021581248.2 → XP_021436923.1  heparan sulfate glucosamine 3-O-sulfotransferase 6-like

    UniProtKB/TrEMBL
    A0A060X803, A0A8C7VSJ2
    Related
    ENSOMYP00000047406.1, ENSOMYT00000051579.2
    Conserved Domains (1) summary
    pfam00685
    Location:123 → 363
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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