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cog5 component of oligomeric golgi complex 5 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110500193, updated on 15-Mar-2024

Summary

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Gene symbol
cog5
Gene description
component of oligomeric golgi complex 5
See related
Ensembl:ENSOMYG00000044613
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See cog5 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
22
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 21 NC_048585.1 (29080304..29168271)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 21 NC_035097.1 (20620860..20708799)

Chromosome 21 - NC_048585.1Genomic Context describing neighboring genes Neighboring gene B-cell receptor-associated protein 29-like Neighboring gene B cell receptor associated protein 29 Neighboring gene tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like Neighboring gene G-protein coupled receptor 22 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 Neighboring gene ankyrin repeat and SOCS box protein 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048585.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    29080304..29168271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021577402.2 → XP_021433077.1  conserved oligomeric Golgi complex subunit 5

    UniProtKB/TrEMBL
    A0A8C7UNU2, A0A8C7USG3
    Related
    ENSOMYP00000098312.2, ENSOMYT00000106752.2
    Conserved Domains (1) summary
    pfam10392
    Location:20 → 142
    COG5; Golgi transport complex subunit 5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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