U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110499179 heparan sulfate glucosamine 3-O-sulfotransferase 6 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110499179, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110499179
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 6
See related
Ensembl:ENSOMYG00000034855
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC110499179 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
2
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 20 NC_048584.1 (22789760..22812764, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 20 NC_035096.1 (20290972..20316147, complement)

Chromosome 20 - NC_048584.1Genomic Context describing neighboring genes Neighboring gene MTOR associated protein, LST8 homolog (S. cerevisiae) Neighboring gene BRICHOS domain containing 5 Neighboring gene methionine sulfoxide reductase B1b Neighboring gene neuralized E3 ubiquitin protein ligase 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048584.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    22789760..22812764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021576138.2 → XP_021431813.2  heparan sulfate glucosamine 3-O-sulfotransferase 6

    UniProtKB/TrEMBL
    A0A060X803, A0A8C7SX55
    Related
    ENSOMYP00000075379.2, ENSOMYT00000082052.2
    Conserved Domains (1) summary
    pfam00685
    Location:122 → 362
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases