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LOC110498255 probable polypeptide N-acetylgalactosaminyltransferase 8 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110498255, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110498255
Gene description
probable polypeptide N-acetylgalactosaminyltransferase 8
See related
Ensembl:ENSOMYG00000020684
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110498255 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 2 NC_048566.1 (85942497..85948458, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 2 NC_035078.1 (70160814..70166311, complement)

Chromosome 2 - NC_048566.1Genomic Context describing neighboring genes Neighboring gene adenosine deaminase 2-A Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8 Neighboring gene RIB43A domain with coiled-coils 2 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial Neighboring gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polypeptide N-acetylgalactosaminyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048566.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    85942497..85948458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021574894.2 → XP_021430569.1  probable polypeptide N-acetylgalactosaminyltransferase 8 isoform X2

    UniProtKB/TrEMBL
    A0A060YN00
    Conserved Domains (3) summary
    cd02510
    Location:191 → 490
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:505 → 629
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    cl27678
    Location:88 → 135
    AMP-binding; AMP-binding enzyme

  2. XM_021574888.2 → XP_021430563.1  probable polypeptide N-acetylgalactosaminyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A060YN00, A0A8C7VT30
    Related
    ENSOMYP00000045127.1, ENSOMYT00000049136.2
    Conserved Domains (3) summary
    cd02510
    Location:191 → 491
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:506 → 630
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    cl27678
    Location:88 → 135
    AMP-binding; AMP-binding enzyme

RNA

  1. XR_005038580.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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