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LOC110498176 mitochondrial basic amino acids transporter [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110498176, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110498176
Gene description
mitochondrial basic amino acids transporter
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110498176 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 19 NC_048583.1 (57806776..57817395, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 19 NC_035095.1 (53361897..53372412, complement)

Chromosome 19 - NC_048583.1Genomic Context describing neighboring genes Neighboring gene doublecortin domain containing 2B Neighboring gene heme-binding protein 1 Neighboring gene solute carrier family 25 member 47b Neighboring gene tryptophanyl-tRNA synthetase 1 Neighboring gene WD repeat-containing protein 25-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-affinity L-arginine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial basic amino acids transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048583.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    57806776..57817395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021574786.2 → XP_021430461.1  mitochondrial basic amino acids transporter isoform X1

    UniProtKB/TrEMBL
    A0A8K9UZD1
    Conserved Domains (1) summary
    pfam00153
    Location:90 → 186
    Mito_carr; Mitochondrial carrier protein

  2. XM_021574789.2 → XP_021430464.1  mitochondrial basic amino acids transporter isoform X3

    UniProtKB/TrEMBL
    A0A8K9UZD1
    Conserved Domains (1) summary
    pfam00153
    Location:34 → 130
    Mito_carr; Mitochondrial carrier protein

  3. XM_021574788.2 → XP_021430463.1  mitochondrial basic amino acids transporter isoform X3

    UniProtKB/TrEMBL
    A0A8K9UZD1
    Conserved Domains (1) summary
    pfam00153
    Location:34 → 130
    Mito_carr; Mitochondrial carrier protein

  4. XM_036955159.1 → XP_036811054.1  mitochondrial basic amino acids transporter isoform X3

    UniProtKB/TrEMBL
    A0A8K9UZD1
    Conserved Domains (1) summary
    pfam00153
    Location:34 → 130
    Mito_carr; Mitochondrial carrier protein

  5. XM_021574790.2 → XP_021430465.1  mitochondrial basic amino acids transporter isoform X3

    UniProtKB/TrEMBL
    A0A8K9UZD1
    Conserved Domains (1) summary
    pfam00153
    Location:34 → 130
    Mito_carr; Mitochondrial carrier protein

  6. XM_021574791.2 → XP_021430466.1  mitochondrial basic amino acids transporter isoform X3

    UniProtKB/TrEMBL
    A0A8K9UZD1
    Conserved Domains (1) summary
    pfam00153
    Location:34 → 130
    Mito_carr; Mitochondrial carrier protein

  7. XM_036955160.1 → XP_036811055.1  mitochondrial basic amino acids transporter isoform X3

    UniProtKB/TrEMBL
    A0A8K9UZD1
    Conserved Domains (1) summary
    pfam00153
    Location:34 → 130
    Mito_carr; Mitochondrial carrier protein

  8. XM_021574787.2 → XP_021430462.1  mitochondrial basic amino acids transporter isoform X2

    UniProtKB/TrEMBL
    A0A8K9UZD1
    Conserved Domains (2) summary
    pfam00153
    Location:70 → 166
    Mito_carr; Mitochondrial carrier protein
    cl28162
    Location:9 → 61
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
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