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LOC110498083 protein O-mannosyl-transferase TMTC2 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110498083, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110498083
Gene description
protein O-mannosyl-transferase TMTC2
See related
Ensembl:ENSOMYG00000018834
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110498083 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 2 NC_048566.1 (85206278..85367562)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 2 NC_035078.1 (69456714..69617993)

Chromosome 2 - NC_048566.1Genomic Context describing neighboring genes Neighboring gene CD209 antigen-like protein C Neighboring gene CD209 antigen-like protein C Neighboring gene protein FAM180A Neighboring gene solute carrier family 23 member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048566.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    85206278..85367562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021574670.2 → XP_021430345.2  protein O-mannosyl-transferase TMTC2

    UniProtKB/TrEMBL
    A0A060X013, A0A8C7VQY2
    Related
    ENSOMYP00000040744.2, ENSOMYT00000044479.2
    Conserved Domains (4) summary
    COG0457
    Location:490 → 731
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5010
    Location:652 → 832
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    sd00006
    Location:502 → 530
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:251 → 324
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
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