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LOC110497842 carbohydrate sulfotransferase 1-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110497842, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110497842
Gene description
carbohydrate sulfotransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110497842 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 2 NC_048566.1 (83155680..83169035, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 2 NC_035078.1 (67451929..67461292, complement)

Chromosome 2 - NC_048566.1Genomic Context describing neighboring genes Neighboring gene ammonium transporter Rh type C-like Neighboring gene tubulin alpha chain Neighboring gene transmembrane protein 263 Neighboring gene cryptochrome-1-like Neighboring gene mitochondrial transcription termination factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048566.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    83155680..83169035 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021574271.2 → XP_021429946.1  carbohydrate sulfotransferase 1-like

    UniProtKB/TrEMBL
    A0A8C7VDB8
    Conserved Domains (1) summary
    cl21551
    Location:216 → 401
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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