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LOC110496653 polypeptide N-acetylgalactosaminyltransferase 4 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110496653, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110496653
Gene description
polypeptide N-acetylgalactosaminyltransferase 4
See related
Ensembl:ENSOMYG00000011644
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110496653 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
11
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 18 NC_048582.1 (60706308..60741503)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 18 NC_035094.1 (52565992..52596817)

Chromosome 18 - NC_048582.1Genomic Context describing neighboring genes Neighboring gene retinitis pigmentosa 9 protein homolog Neighboring gene chromosome 18 C18orf21 homolog Neighboring gene polypeptide N-acetylgalactosaminyltransferase 12 Neighboring gene gamma-aminobutyric acid type B receptor subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048582.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    60706308..60741503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021572672.2 → XP_021428347.1  polypeptide N-acetylgalactosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C7VGR5, A0A8L0DNK7
    Conserved Domains (2) summary
    cd02510
    Location:146 → 440
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:465 → 582
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_021572671.2 → XP_021428346.1  polypeptide N-acetylgalactosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C7VGR5, A0A8L0DNK7
    Related
    ENSOMYP00000024528.1, ENSOMYT00000026855.2
    Conserved Domains (2) summary
    cd02510
    Location:146 → 440
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:465 → 582
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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