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LOC110495389 cobalamin trafficking protein CblD [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110495389, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110495389
Gene description
cobalamin trafficking protein CblD
See related
Ensembl:ENSOMYG00000034217
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110495389 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
9
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 18 NC_048582.1 (8823529..8835425)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 18 NC_035094.1 (1425712..1436071, complement)

Chromosome 18 - NC_048582.1Genomic Context describing neighboring genes Neighboring gene mucin-5AC Neighboring gene rho-related GTP-binding protein RhoE Neighboring gene ly6/PLAUR domain-containing protein 6 Neighboring gene uncharacterized LOC118941058 Neighboring gene kinesin heavy chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cobalamin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cobalamin trafficking protein CblD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048582.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    8823529..8835425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036951660.1 → XP_036807555.1  cobalamin trafficking protein CblD

    UniProtKB/TrEMBL
    A0A8C7STT5, A0A8C7STV9, A0A8C7W4V5
    Related
    ENSOMYP00000073987.1, ENSOMYT00000080550.2
    Conserved Domains (1) summary
    pfam10229
    Location:26 → 292
    MMADHC; Methylmalonic aciduria and homocystinuria type D protein

  2. XM_036951662.1 → XP_036807557.1  cobalamin trafficking protein CblD

    UniProtKB/TrEMBL
    A0A8C7STT5, A0A8C7STV9, A0A8C7W4V5
    Conserved Domains (1) summary
    pfam10229
    Location:26 → 292
    MMADHC; Methylmalonic aciduria and homocystinuria type D protein

  3. XM_036951661.1 → XP_036807556.1  cobalamin trafficking protein CblD

    UniProtKB/TrEMBL
    A0A8C7STT5, A0A8C7STV9, A0A8C7W4V5
    Conserved Domains (1) summary
    pfam10229
    Location:26 → 292
    MMADHC; Methylmalonic aciduria and homocystinuria type D protein
Nucleotide Protein
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