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LOC110492703 host cell factor 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110492703, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110492703
Gene description
host cell factor 1
See related
Ensembl:ENSOMYG00000011184
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110492703 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
31
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 16 NC_048580.1 (74924763..74984835, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 16 NC_035092.1 (69394376..69444760)

Chromosome 16 - NC_048580.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110510930 Neighboring gene GATA-binding factor 2-like Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene uncharacterized LOC118939595 Neighboring gene serine/arginine repetitive matrix protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048580.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    74924763..74984835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036947803.1 → XP_036803698.1  host cell factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8K9XCK2
    Conserved Domains (4) summary
    PLN02153
    Location:7 → 321
    PLN02153; epithiospecifier protein
    cd00063
    Location:1627 → 1657
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:192 → 241
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:363 → 785
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_036947804.1 → XP_036803699.1  host cell factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8K9XCK2
    Conserved Domains (4) summary
    PLN02153
    Location:7 → 321
    PLN02153; epithiospecifier protein
    cd00063
    Location:1627 → 1657
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:192 → 241
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:363 → 785
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. XM_036947805.1 → XP_036803700.1  host cell factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8K9XCK2, A0A8K9XR10
    Related
    ENSOMYP00000137323.1, ENSOMYT00000135480.1
    Conserved Domains (4) summary
    PLN02153
    Location:7 → 321
    PLN02153; epithiospecifier protein
    cd00063
    Location:1623 → 1653
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:192 → 241
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:363 → 785
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  4. XM_036947806.1 → XP_036803701.1  host cell factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8K9XCK2
    Related
    ENSOMYP00000131003.1, ENSOMYT00000130748.1
    Conserved Domains (4) summary
    PLN02153
    Location:7 → 321
    PLN02153; epithiospecifier protein
    cd00063
    Location:1620 → 1650
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:192 → 241
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:363 → 785
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
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