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LOC110492367 polypeptide N-acetylgalactosaminyltransferase 6 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110492367, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110492367
Gene description
polypeptide N-acetylgalactosaminyltransferase 6
See related
Ensembl:ENSOMYG00000045759
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110492367 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
11
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 16 NC_048580.1 (56231265..56236905, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 16 NC_035092.1 (52736068..52741704, complement)

Chromosome 16 - NC_048580.1Genomic Context describing neighboring genes Neighboring gene glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic Neighboring gene glucose-6-phosphate 1-dehydrogenase Neighboring gene testis-expressed protein 49-like Neighboring gene adenylate cyclase type 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048580.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    56231265..56236905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021566622.2 → XP_021422297.2  polypeptide N-acetylgalactosaminyltransferase 6

    UniProtKB/TrEMBL
    A0A060WIA3, A0A8C7UZW4
    Related
    ENSOMYP00000101350.2, ENSOMYT00000109930.2
    Conserved Domains (2) summary
    cd02510
    Location:178 → 483
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:495 → 619
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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