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LOC110489148 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110489148, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110489148
Gene description
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
See related
Ensembl:ENSOMYG00000021206
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110489148 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
24
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 14 NC_048578.1 (32666262..32701558)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 14 NC_035090.1 (73028960..73049396, complement)

Chromosome 14 - NC_048578.1Genomic Context describing neighboring genes Neighboring gene rho-related GTP-binding protein RhoG Neighboring gene FH2 domain-containing protein 1 Neighboring gene uncharacterized LOC110489154 Neighboring gene uncharacterized LOC110489153

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048578.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    32666262..32701558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036943336.1 → XP_036799231.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

    UniProtKB/TrEMBL
    A0A8C7U8N7
    Conserved Domains (3) summary
    TIGR02917
    Location:23 → 471
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:333 → 361
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:482 → 1044
    Glyco_transf_41; Glycosyl transferase family 41

  2. XM_036943337.1 → XP_036799232.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

    UniProtKB/TrEMBL
    A0A8C7U8N7
    Conserved Domains (3) summary
    TIGR02917
    Location:23 → 471
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:333 → 361
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:482 → 1041
    Glyco_transf_41; Glycosyl transferase family 41

  3. XM_036943341.1 → XP_036799236.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X6

    UniProtKB/TrEMBL
    A0A8C7U8N7
    Conserved Domains (3) summary
    TIGR02917
    Location:23 → 460
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:322 → 350
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:471 → 1033
    Glyco_transf_41; Glycosyl transferase family 41

  4. XM_036943344.1 → XP_036799239.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X9

    UniProtKB/TrEMBL
    A0A8C7U8N7
    Conserved Domains (3) summary
    TIGR02917
    Location:21 → 450
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:466 → 1022
    Glyco_transf_41; Glycosyl transferase family 41

  5. XM_036943347.1 → XP_036799242.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X11

    UniProtKB/TrEMBL
    A0A8C7WHF2
    Related
    ENSOMYP00000094963.2, ENSOMYT00000103221.2
    Conserved Domains (3) summary
    TIGR02917
    Location:21 → 450
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:466 → 1006
    Glyco_transf_41; Glycosyl transferase family 41

  6. XM_036943342.1 → XP_036799237.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X7

    UniProtKB/TrEMBL
    A0A8C7UHS6
    Conserved Domains (3) summary
    TIGR02917
    Location:20 → 471
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:333 → 361
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:482 → 1028
    Glyco_transf_41; Glycosyl transferase family 41

  7. XM_036943339.1 → XP_036799234.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X4

    UniProtKB/TrEMBL
    A0A8C7U8N7
    Conserved Domains (3) summary
    TIGR02917
    Location:20 → 471
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:333 → 361
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:482 → 1038
    Glyco_transf_41; Glycosyl transferase family 41

  8. XM_036943338.1 → XP_036799233.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X3

    UniProtKB/TrEMBL
    A0A8C7U8N7
    Conserved Domains (3) summary
    TIGR02917
    Location:32 → 461
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:294 → 322
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:477 → 1039
    Glyco_transf_41; Glycosyl transferase family 41

  9. XM_036943343.1 → XP_036799238.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X8

    UniProtKB/TrEMBL
    A0A8C7UHS6
    Related
    ENSOMYP00000046490.2, ENSOMYT00000050572.2
    Conserved Domains (3) summary
    TIGR02917
    Location:32 → 461
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:294 → 322
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:477 → 1023
    Glyco_transf_41; Glycosyl transferase family 41

  10. XM_036943340.1 → XP_036799235.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X5

    UniProtKB/TrEMBL
    A0A8C7U8N7, A0A8C7U8Y2
    Related
    ENSOMYP00000094833.2, ENSOMYT00000103079.2
    Conserved Domains (3) summary
    TIGR02917
    Location:32 → 461
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:294 → 322
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:477 → 1033
    Glyco_transf_41; Glycosyl transferase family 41

  11. XM_036943346.1 → XP_036799241.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X10

    UniProtKB/TrEMBL
    A0A8C7UHS6
    Related
    ENSOMYP00000142959.1, ENSOMYT00000142574.1
    Conserved Domains (3) summary
    TIGR02917
    Location:32 → 461
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:294 → 322
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:477 → 1017
    Glyco_transf_41; Glycosyl transferase family 41

  12. XM_036943348.1 → XP_036799243.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X12

    Conserved Domains (3) summary
    TIGR02917
    Location:6 → 294
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:156 → 184
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:305 → 867
    Glyco_transf_41; Glycosyl transferase family 41
Nucleotide Protein
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