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LOC110489080 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110489080, updated on 15-Mar-2024

Summary

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Gene symbol
LOC110489080
Gene description
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2
See related
Ensembl:ENSOMYG00000009934
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See LOC110489080 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 14 NC_048578.1 (26869406..26873267)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 14 NC_035090.1 (68821914..68827271, complement)

Chromosome 14 - NC_048578.1Genomic Context describing neighboring genes Neighboring gene transcriptional activator protein Pur-alpha Neighboring gene neuregulin 2b Neighboring gene eukaryotic translation initiation factor 1A domain containing Neighboring gene cathepsin F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048578.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    26869406..26873267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021561646.2 → XP_021417321.2  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2

    UniProtKB/TrEMBL
    A0A060XHP2, A0A8C7PF20
    Related
    ENSOMYP00000020597.2, ENSOMYT00000022617.2
    Conserved Domains (1) summary
    cl21608
    Location:204 → 408
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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