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LOC110488860 beta-1,4-galactosyltransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110488860, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110488860
Gene description
beta-1,4-galactosyltransferase 1
See related
Ensembl:ENSOMYG00000038034
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110488860 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 14 NC_048578.1 (13767480..13785225)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 14 NC_035090.1 (55936921..55954420)

Chromosome 14 - NC_048578.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase II subunit RPB2 Neighboring gene nitric oxide-associated protein 1-like Neighboring gene RE1-silencing transcription factor B Neighboring gene uncharacterized LOC118938698 Neighboring gene exosome complex component RRP40

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytoskeletal protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048578.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    13767480..13785225
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021561290.2 → XP_021416965.1  beta-1,4-galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A060W2C9
    Related
    ENSOMYP00000082368.1, ENSOMYT00000089744.2
    Conserved Domains (1) summary
    cd00899
    Location:138 → 355
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases