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LOC110488472 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110488472, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110488472
Gene description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B
See related
Ensembl:ENSOMYG00000003955
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110488472 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
16
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 32 NC_050572.1 (37997250..38092516, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 14 NC_035090.1 (39313137..39503994, complement)

Chromosome 32 - NC_050572.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 42 Neighboring gene oxysterol-binding protein-related protein 10 Neighboring gene TGF receptor-2 precursor Neighboring gene RNA-binding motif, single-stranded-interacting protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-translational protein modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B
Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_050572.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    37997250..38092516 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036970671.1 → XP_036826566.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B

    UniProtKB/TrEMBL
    A0A8C7NHD9, A0A8C7V479
    Related
    ENSOMYP00000007690.2, ENSOMYT00000008565.2
    Conserved Domains (1) summary
    pfam02516
    Location:59 → 551
    STT3; Oligosaccharyl transferase STT3 subunit
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases