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LOC110488385 exostosin-1c [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110488385, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110488385
Gene description
exostosin-1c
See related
Ensembl:ENSOMYG00000072598
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110488385 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
13
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 32 NC_050572.1 (36473329..36568830, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 14 NC_035090.1 (32900000..32907015, complement)

Chromosome 32 - NC_050572.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118946521 Neighboring gene mucin-2 Neighboring gene uncharacterized LOC110488381 Neighboring gene probable thiopurine S-methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1c
Names
exostosin-1c pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_050572.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    36473329..36568830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036970808.1 → XP_036826703.1  exostosin-1c isoform X1

    UniProtKB/TrEMBL
    A0A8K9ULI1
    Related
    ENSOMYP00000111076.1, ENSOMYT00000142955.1
    Conserved Domains (2) summary
    pfam03016
    Location:106 → 391
    Exostosin; Exostosin family
    pfam09258
    Location:475 → 738
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_036970806.1 → XP_036826701.1  exostosin-1c isoform X1

    UniProtKB/TrEMBL
    A0A8K9ULI1
    Conserved Domains (2) summary
    pfam03016
    Location:106 → 391
    Exostosin; Exostosin family
    pfam09258
    Location:475 → 738
    Glyco_transf_64; Glycosyl transferase family 64 domain

  3. XM_036970807.1 → XP_036826702.1  exostosin-1c isoform X1

    UniProtKB/TrEMBL
    A0A8K9ULI1
    Conserved Domains (2) summary
    pfam03016
    Location:106 → 391
    Exostosin; Exostosin family
    pfam09258
    Location:475 → 738
    Glyco_transf_64; Glycosyl transferase family 64 domain

  4. XM_036970811.1 → XP_036826706.1  exostosin-1c isoform X2

    Conserved Domains (2) summary
    pfam03016
    Location:106 → 391
    Exostosin; Exostosin family
    pfam09258
    Location:475 → 720
    Glyco_transf_64; Glycosyl transferase family 64 domain

  5. XM_036970809.1 → XP_036826704.1  exostosin-1c isoform X1

    UniProtKB/TrEMBL
    A0A8K9ULI1
    Conserved Domains (2) summary
    pfam03016
    Location:106 → 391
    Exostosin; Exostosin family
    pfam09258
    Location:475 → 738
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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