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LOC110488197 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110488197, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110488197
Gene description
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1
See related
Ensembl:ENSOMYG00000009309
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110488197 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
8
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 32 NC_050572.1 (27800567..27833055)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 14 NC_035090.1 (23102427..23116441)

Chromosome 32 - NC_050572.1Genomic Context describing neighboring genes Neighboring gene protein FAM135B Neighboring gene KH domain-containing, RNA-binding, signal transduction-associated protein 3-like Neighboring gene uncharacterized LOC118946492 Neighboring gene cleavage and polyadenylation specificity factor subunit 1 Neighboring gene uncharacterized aarF domain-containing protein kinase 5 Neighboring gene poly(ADP-ribose) polymerase family member 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside (CMP) alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_050572.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    27800567..27833055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036971193.1 → XP_036827088.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A060XDB6, A0A8C7VEB4
    Conserved Domains (1) summary
    pfam00777
    Location:85 → 329
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_036971192.1 → XP_036827087.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A060XDB6, A0A8C7VEB4
    Related
    ENSOMYP00000019189.2, ENSOMYT00000021085.2
    Conserved Domains (1) summary
    pfam00777
    Location:85 → 329
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_036971194.1 → XP_036827089.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A060XDB6
    Conserved Domains (1) summary
    pfam00777
    Location:26 → 270
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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