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LOC110487870 alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110487870, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110487870
Gene description
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
See related
Ensembl:ENSOMYG00000004423
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110487870 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
4
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 32 NC_050572.1 (8846155..8869810, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 14 NC_035090.1 (5344288..5358174, complement)

Chromosome 32 - NC_050572.1Genomic Context describing neighboring genes Neighboring gene general transcription factor IIH, polypeptide 4 Neighboring gene spliceosome RNA helicase DDX39B-like Neighboring gene E3 ubiquitin-protein ligase PPP1R11 Neighboring gene uncharacterized LOC110487871

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_050572.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    8846155..8869810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036971370.1 → XP_036827265.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    A0A060XWW9, A0A8K9XZ19
    Conserved Domains (1) summary
    cd02514
    Location:183 → 514
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

  2. XM_021559785.2 → XP_021415460.2  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    A0A060XWW9, A0A8K9XZ19
    Conserved Domains (1) summary
    cd02514
    Location:183 → 514
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

  3. XM_021559787.2 → XP_021415462.2  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    A0A060XWW9, A0A8K9XZ19
    Related
    ENSOMYP00000140768.1, ENSOMYT00000128139.1
    Conserved Domains (1) summary
    cd02514
    Location:183 → 514
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

  4. XM_021559783.2 → XP_021415458.2  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    A0A060XWW9, A0A8K9XZ19
    Conserved Domains (1) summary
    cd02514
    Location:183 → 514
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

  5. XM_021559786.2 → XP_021415461.2  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    A0A060XWW9, A0A8K9XZ19
    Conserved Domains (1) summary
    cd02514
    Location:183 → 514
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
Nucleotide Protein
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