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LOC110487634 exostosin-1b-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110487634, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110487634
Gene description
exostosin-1b-like
See related
Ensembl:ENSOMYG00000047541
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110487634 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
11
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 32 NC_050572.1 (37099833..37195775)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 14 NC_035090.1 (34676201..34708871)

Chromosome 32 - NC_050572.1Genomic Context describing neighboring genes Neighboring gene actin-binding Rho-activating protein Neighboring gene sterile alpha motif domain-containing protein 12-like Neighboring gene mediator of RNA polymerase II transcription subunit 30 Neighboring gene zinc transporter 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1b-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_050572.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    37099833..37195775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036971037.1 → XP_036826932.1  exostosin-1b-like

    UniProtKB/TrEMBL
    A0A8C7WJT6
    Related
    ENSOMYP00000106123.2, ENSOMYT00000115003.2
    Conserved Domains (2) summary
    pfam03016
    Location:104 → 390
    Exostosin; Exostosin family
    pfam09258
    Location:474 → 719
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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