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LOC110487557 heparan sulfate glucosamine 3-O-sulfotransferase 6-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110487557, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110487557
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 6-like
See related
Ensembl:ENSOMYG00000073437
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110487557 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) Unplaced Scaffold NW_023493685.1 (348654..376059)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 13 NC_035089.1 (51356535..51357879, complement)

NW_023493685.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110511909 Neighboring gene uncharacterized LOC110518042 Neighboring gene acylpyruvase FAHD1, mitochondrial Neighboring gene hydroxyacylglutathione hydrolase, mitochondrial Neighboring gene cytosolic Fe-S cluster assembly factor narfl-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NW_023493685.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    348654..376059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036972988.1 → XP_036828883.1  heparan sulfate glucosamine 3-O-sulfotransferase 6-like

    UniProtKB/TrEMBL
    A0A8K9X4E7
    Related
    ENSOMYP00000127657.1, ENSOMYT00000166648.1
    Conserved Domains (1) summary
    pfam00685
    Location:143 → 379
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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