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LOC110486734 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110486734, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110486734
Gene description
4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9
See related
Ensembl:ENSOMYG00000012030
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110486734 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 13 NC_048577.1 (51324906..51329316, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 13 NC_035089.1 (47747329..47751260, complement)

Chromosome 13 - NC_048577.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110486733 Neighboring gene adhesion G protein-coupled receptor L1 Neighboring gene adhesion G protein-coupled receptor E5 Neighboring gene prostaglandin E2 receptor EP1 subtype-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048577.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    51324906..51329316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036941439.1 → XP_036797334.1  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A060Y092, A0A8C7PP86
    Related
    ENSOMYP00000025364.2, ENSOMYT00000027775.2
    Conserved Domains (2) summary
    pfam00852
    Location:173 → 342
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:52 → 157
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

  2. XM_021558556.2 → XP_021414231.1  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A060Y092, A0A8C7PP86
    Conserved Domains (2) summary
    pfam00852
    Location:173 → 342
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:52 → 157
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

  3. XM_021558555.2 → XP_021414230.1  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 isoform X1

    UniProtKB/TrEMBL
    A0A060Y092
    Conserved Domains (2) summary
    pfam00852
    Location:182 → 351
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:61 → 166
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

  4. XM_021558557.2 → XP_021414232.1  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A060Y092, A0A8C7PP86
    Conserved Domains (2) summary
    pfam00852
    Location:173 → 342
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:52 → 157
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

  5. XM_036941438.1 → XP_036797333.1  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A060Y092, A0A8C7PP86
    Conserved Domains (2) summary
    pfam00852
    Location:173 → 342
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:52 → 157
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

  6. XM_036941437.1 → XP_036797332.1  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A060Y092, A0A8C7PP86
    Conserved Domains (2) summary
    pfam00852
    Location:173 → 342
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:52 → 157
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
Nucleotide Protein
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