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LOC110486691 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110486691, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110486691
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
See related
Ensembl:ENSOMYG00000006123
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110486691 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 13 NC_048577.1 (49551722..49557177)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 13 NC_035089.1 (46082673..46088073)

Chromosome 13 - NC_048577.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RNF113A Neighboring gene RUN domain-containing protein 3A Neighboring gene uncharacterized LOC118938314 Neighboring gene protein FAM117A Neighboring gene solute carrier family 35 member B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048577.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    49551722..49557177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021558469.2 → XP_021414144.2  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A060XU44, A0A8C7NUJ0
    Related
    ENSOMYP00000012242.2, ENSOMYT00000013547.2
    Conserved Domains (1) summary
    cl21608
    Location:165 → 266
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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