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LOC110486578 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110486578, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110486578
Gene description
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like
See related
Ensembl:ENSOMYG00000029049
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110486578 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 13 NC_048577.1 (46422708..46428266, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 13 NC_035089.1 (43129841..43135830, complement)

Chromosome 13 - NC_048577.1Genomic Context describing neighboring genes Neighboring gene Na(+)/H(+) exchange regulatory cofactor NHE-RF1 Neighboring gene caskin-2 Neighboring gene protein TsetseEP Neighboring gene bifunctional arginine demethylase and lysyl-hydroxylase JMJD6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048577.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    46422708..46428266 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021558288.2 → XP_021413963.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like

    UniProtKB/TrEMBL
    A0A060XMX5, A0A8C7S7F5
    Related
    ENSOMYP00000062787.1, ENSOMYT00000068371.2
    Conserved Domains (1) summary
    pfam00777
    Location:94 → 374
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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