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LOC110486573 xylosyltransferase 2 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110486573, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110486573
Gene description
xylosyltransferase 2
See related
Ensembl:ENSOMYG00000028892
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110486573 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 13 NC_048577.1 (46257363..46272370)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 13 NC_035089.1 (42966224..42981027)

Chromosome 13 - NC_048577.1Genomic Context describing neighboring genes Neighboring gene butyrophilin subfamily 1 member A1 Neighboring gene uncharacterized LOC118938311 Neighboring gene ras-related protein Rab-37 Neighboring gene Na(+)/H(+) exchange regulatory cofactor NHE-RF1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048577.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    46257363..46272370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036941287.1 → XP_036797182.1  xylosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C7SU16
    Conserved Domains (2) summary
    pfam02485
    Location:220 → 472
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:505 → 683
    Xylo_C; Xylosyltransferase C terminal

  2. XM_036941285.1 → XP_036797180.1  xylosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C7SBS8, A0A8C7SU16
    Related
    ENSOMYP00000062501.2, ENSOMYT00000068064.2
    Conserved Domains (2) summary
    pfam02485
    Location:253 → 505
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:538 → 716
    Xylo_C; Xylosyltransferase C terminal
Nucleotide Protein
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